Researchs

List of our on-going research projects

Vietnam Osteoporosis Study (VOS)

The hypothesis underlying the present study is that osteoporosis and its multimorbidity non-communicable diseases (NCDs) share genes, their encoded proteins and pathways that stratify patients in subgroups and their tendency to co-occur together. The overall goal of VOS is to map genetic and environmental factors that underlie the risk of fragility fracture and the co-occurrence of related chronic diseases (i.e., the so-called "diseasome") in the Vietnamese people. We pursue the following specific aims:

  1. Assess the skeletal burden and its associated morbidities in the general population. We aim to estimate the prevalence of osteoporosis, osteoarthritis and multimorbidity, the incidence of fragility fractures and osteoarthritis in men and women by age group;
  2. Determine the extent to which variation in osteoporosis, fracture and osteoarthritis susceptibility is determined by genetic factors. We also aim to identify genetic variants that are associated with osteoporosis, fracture and osteoarthritis;
  3. Understand the interplay between genes and environmental factors in the determination of the association between osteoporosis and other chronic diseases, NCDs including osteoarthritis, sarcopenia, obesity, diabetes, metabolic syndrome, and cardiovascular disease.

This 10-year prospective study will contribute significant new information on the genetic and environmental bases of osteoporosis and related chronic diseases. The project will also contribute to the knowledge on the specific genes that underlie the between subject variation in skeletal parameters.
There are already several publications for this research project. And there will be more in the coming period.

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Implication of cell free DNA (cfDNA) in early diagnosis of common cancers in Vietnamese population

This research is an ongoing collaboration with the Johns Hopkins University School of Medicine, USA.

We have conducted a case-control study to validate and develop prediction tools for early cancer diagnosis for common cancers in Vietnam.

The secondary aim is to establish a bioresource which can be used in collaboration with other clinical investigators or contributed to international consortia of epidemiological studies of cancer in Asia and internationally.

We also plan to collaborate with the Johns Hopkins University School of Medicine, USA conduct a clinical trial to examine the effect of cfDNA in detecting minimal residual disease (MRD) and indicating of adjuvant chemotherapy in colorectal and breast cancer. We hope the clinical application of cfDNA-based MRD detection can assist clinical decision-making and improve patient outcomes in malignant tumors.

Publications:

  1. CHRISTOPHER DOUVILLE, KAMEL LAHOUEL, ALBERT KUO, HALEY GRANT, BRACHA ERLANGER AVIGDOR, SAMUEL D. CURTIS , MAHMOUD SUMMERS, JOSHUA D. COHEN, YUXUAN WANG, AUSTIN MATTOX, JONATHAN DUDLEY, LISA DOBBYN, MARIA POPOLI, JANINE PTAK, NADINE NEHME, NATALIE SILLIMAN, CHERIE BLAIR, KATHARINE ROMANS, CHRISTOPHER THOBURN, JENNIFER GIZZI, ROBERT E. SCHOEN, JEANNE TIE, PETER GIBBS, LAN T. HO-PHAM, BICH N. H. TRAN, THACH S. TRAN, TUAN V. NGUYEN, MICHAEL GOGGINS, CHRISTOPHER L. WOLFGANG, TIAN-LI WANG, IE-MING SHIH, ANNE MARIE LENNON, RALPH H. HRUBAN, CHETAN BETTEGOWDA, KENNETH W. KINZLER, NICKOLAS PAPADOPOULOS, BERT VOGELSTEIN, AND CRISTIAN TOMASETTI. Machine learning to detect the SINEs of cancer. Science Translational Medicine 16:731 2024 – DOIPubMed
  2. Wang Y, Douville C, Cohen JD, Mattox A, Curtis S, Silliman N, Popoli M, Ptak J, Dobbyn L, Nehme N, Dudley JC, Summers M, Zhang M, Lan T. Ho-Pham, Bich N H Tran, Thach S Tran, Tuan V Nguyen, Chetan Bettegowda, Nickolas Papadopoulos, Kenneth W Kinzler, Bert Vogelstein. Detection of rare mutations, copy number alterations, and methylation in the same template DNA molecules. Proceedings of the National Academy of Sciences (PNAS) 2023 – DOIPubMed
  3. More publications coming soon during 2025.

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Implication of artificial intelligence (AI) in medicine

Using AI for medical imaging analysis has grown significantly in recent years and offers advantages in interpreting data.

We plan to conduct a prospective study to validate and develop detection tools for breast cancer in Vietnam. Also to release the entire end-to-end platform for development, deployment and operation of breast cancer AI as open-source.

With the strength points: large sample size (>10,000 participants), combining demographic/clinical data, diversity of dataset (wide age and breast density groups), and different vendor equipments (Hologic and Siemen), the study can help to:

  1. develop an AI CAD tools having its robustness against clinical heterogeneous populations for detection breast cancer and
  2. develop reproducible experiments and deployments in clinical practice.

Publications/Conferences:

  1. Hien Q. Kha, Dinh-Tan Nguyen, Thinh B Lam, Thanh-Huy Nguyen, Cao T Tran, Manh D Vu, Lan T Ho-Pham, Liem Pham, Nguyen Quoc Khanh Le. M2NET: Two-Stage Multi-Label Breast Cancer Detection Networks 2024 IEEE International Symposium on Biomedical Imaging (ISBI)DOI
  2. The work is currently in progress. More information coming soon.

Research Collaboration

Saigonmec promotes open research and international collaboration in precision medicine by encouraging data sharing and collaborative research. We believe open access to our well-curated datasets can accelerate research and enable breakthroughs.
If you have research ideas that could benefit from our datasets, please contact us at contact@saigonmec.org